Update HDeXaminer datafile
update_hdexaminer_file.RdUpdate data from HDeXaminer file
Usage
update_hdexaminer_file(
dat,
fd_time,
old_protein_name = NULL,
new_protein_name = NULL,
old_state_name = NULL,
new_state_name = NULL,
confidence = c("High", "Medium")
)Arguments
- dat
data imported by the
read_hdxfunction- fd_time
time point [min] for fully deuterated sample
- old_protein_name
protein name to be changed
- new_protein_name
new name for old_protein_name
- old_state_name
state names to be changed
- new_state_name
new names for old_state_name
- confidence
vector of accepted confidence values (internal flag from HDeXaminer). By default only accepted values are `Medium` and `High`, with `Low` excluded
Value
a data.frame object
Details
The function update_hdexaminer_file
changes the data read from HDeXaminer file.
Data from HDeXaminer is condensed and automated
data retrieving may be corrected by the user.
The original file has a mark "FD" for fully deuterated
data instead of numerical value for time point
(provided in minutes) that is not consistent for workflow
and not enough for precise data description.
Moreover, the data about both protein and state is included
in one column and for detailed information
function update_hdexaminer_file allows to change them.