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Differential uptake data with confidence

show_diff_uptake_data_confidence.Rd

Present differential deuterium uptake values in selected form, accompanied by the significance

Usage

show_diff_uptake_data_confidence(
  diff_uptake_dat,
  theoretical = FALSE,
  fractional = FALSE,
  confidence_level = 0.98,
  hybrid = FALSE
)

Arguments

diff_uptake_dat

data produced by create_diff_uptake_dataset function

theoretical

logical, indicator if values are calculated using theoretical controls

fractional

logical, indicator if values are shown in fractional form

confidence_level

confidence level for the test, from range [0, 1].

hybrid

logical, indicator if the hybrid testing was applied in diff_uptake_dat.

Value

a data.frame object

Details

The function show_uptake_data generates a subsets of the uptake dat based on selected parameters. It contains the information if the value is statistically significant at selected confidence level. The numerical values are rounded to 4 places. The names of columns are changed to user-friendly ones.

See also

create_diff_uptake_dataset plot_differential

Examples

diff_uptake_dat <- create_diff_uptake_dataset(alpha_dat)
show_diff_uptake_data_confidence(diff_uptake_dat)
#>        Protein    Sequence    ID Modification Start   End Exposure Diff DU [Da]
#>         <char>      <char> <int>       <lgcl> <int> <int>    <num>        <num>
#>   1: db_eEF1Ba GFGDLKSPAGL     1           NA     1    11    0.167       0.0745
#>   2: db_eEF1Ba GFGDLKSPAGL     1           NA     1    11    1.000       0.4316
#>   3: db_eEF1Ba GFGDLKSPAGL     1           NA     1    11    5.000       0.3947
#>   4: db_eEF1Ba GFGDLKSPAGL     1           NA     1    11   25.000       0.5304
#>   5: db_eEF1Ba GFGDLKSPAGL     1           NA     1    11  150.000       0.0670
#>  ---                                                                           
#> 632: db_eEF1Ba       DVAAF   106           NA   217   221    1.000       0.1729
#> 633: db_eEF1Ba       DVAAF   106           NA   217   221    5.000       0.1173
#> 634: db_eEF1Ba       DVAAF   106           NA   217   221   25.000       0.1597
#> 635: db_eEF1Ba       DVAAF   106           NA   217   221  150.000      -0.0166
#> 636: db_eEF1Ba       DVAAF   106           NA   217   221 1440.000       0.0000
#>      U(Diff DU) [Da] Valid At 0.98
#>                <num>        <lgcl>
#>   1:          0.0208          TRUE
#>   2:          0.0391          TRUE
#>   3:          0.0573          TRUE
#>   4:          0.1068          TRUE
#>   5:          0.0946          TRUE
#>  ---                              
#> 632:          0.0266          TRUE
#> 633:          0.0057          TRUE
#> 634:          0.0318          TRUE
#> 635:          0.0132          TRUE
#> 636:          0.0075         FALSE