Skip to contents

Deuterium uptake data

show_uptake_data.Rd

Present deuterium uptake values in selected form

Usage

show_uptake_data(
  uptake_dat,
  theoretical = FALSE,
  fractional = FALSE,
  renamed = TRUE
)

Arguments

uptake_dat

data produced by create_uptake_dataset function or create_state_uptake_dataset

theoretical

logical, indicator if values are calculated using theoretical controls

fractional

logical, indicator if values are shown in fractional form

renamed

logical, indicator if the names of the columns are renamed to user-friendly ones. Currently FALSE not implemented.

Value

a data.frame object

Details

The function show_uptake_data generates a subsets of the uptake_dat based on selected parameters. The numerical values are rounded to 4 places. The names of columns are changed to user-friendly ones.

See also

read_hdx create_uptake_dataset

Examples

uptake_dat <- create_uptake_dataset(alpha_dat)
show_uptake_data(uptake_dat)
#>         Protein    Sequence    ID Modification       State Start   End Exposure
#>          <char>      <char> <int>       <lgcl>      <char> <int> <int>    <num>
#>    1: db_eEF1Ba GFGDLKSPAGL     1           NA ALPHA_Gamma     1    11    0.167
#>    2: db_eEF1Ba GFGDLKSPAGL     1           NA ALPHA_Gamma     1    11    1.000
#>    3: db_eEF1Ba GFGDLKSPAGL     1           NA ALPHA_Gamma     1    11    5.000
#>    4: db_eEF1Ba GFGDLKSPAGL     1           NA ALPHA_Gamma     1    11   25.000
#>    5: db_eEF1Ba GFGDLKSPAGL     1           NA ALPHA_Gamma     1    11  150.000
#>   ---                                                                          
#> 1904: db_eEF1Ba       DVAAF   106           NA  Alpha_KSCN   217   221    1.000
#> 1905: db_eEF1Ba       DVAAF   106           NA  Alpha_KSCN   217   221    5.000
#> 1906: db_eEF1Ba       DVAAF   106           NA  Alpha_KSCN   217   221   25.000
#> 1907: db_eEF1Ba       DVAAF   106           NA  Alpha_KSCN   217   221  150.000
#> 1908: db_eEF1Ba       DVAAF   106           NA  Alpha_KSCN   217   221 1440.000
#>       DU [Da] U(DU) [Da]
#>         <num>      <num>
#>    1:  1.6651     0.0031
#>    2:  2.8430     0.0351
#>    3:  3.5954     0.0573
#>    4:  4.6885     0.0724
#>    5:  5.3574     0.0805
#>   ---                   
#> 1904:  1.2078     0.0259
#> 1905:  1.4583     0.0190
#> 1906:  1.8349     0.0254
#> 1907:  1.9907     0.0123
#> 1908:  1.9832     0.0053