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Deuterium uptake curve data

show_uc_data.Rd

Present deuterium uptake curve data

Usage

show_uc_data(uc_dat, theoretical = FALSE, fractional = FALSE)

Arguments

uc_dat

calculated kinetic data by calculate_kinetics or calculate_peptide_kinetics or create_kinetic_dataset function

theoretical

logical, indicator if values are calculated using theoretical controls

fractional

logical, indicator if values are shown in fractional form

Value

a data.frame object

Details

The function show_uptake_data generates a subsets of the uc_dat based on selected parameters. The numerical values are rounded to 4 places. The names of columns are changed to user-friendly ones.

See also

read_hdx calculate_kinetics calculate_peptide_kinetics

Examples

uc_dat <- calculate_kinetics(alpha_dat,
                             sequence = "GFGDLKSPAGL", 
                             state = "ALPHA_Gamma",
                             start = 1, end = 11)
show_uc_data(uc_dat)
#>     Protein    Sequence       State Start End Time Point DU [Da] Err DU [Da]
#> 1 db_eEF1Ba GFGDLKSPAGL ALPHA_Gamma     1  11      0.167  1.6651      0.0031
#> 2 db_eEF1Ba GFGDLKSPAGL ALPHA_Gamma     1  11      1.000  2.8430      0.0351
#> 3 db_eEF1Ba GFGDLKSPAGL ALPHA_Gamma     1  11      5.000  3.5954      0.0573
#> 4 db_eEF1Ba GFGDLKSPAGL ALPHA_Gamma     1  11     25.000  4.6885      0.0724
#> 5 db_eEF1Ba GFGDLKSPAGL ALPHA_Gamma     1  11    150.000  5.3574      0.0805