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Show peptide charge measurement

show_peptide_charge_measurement.Rd

Show the charge measurements from replicates for peptide in specific time point.

Usage

show_peptide_charge_measurement(
  dat,
  protein = dat[["Protein"]][1],
  state = dat[["State"]][1],
  sequence = dat[["Sequence"]][1],
  time_t = unique(dat[["Exposure"]])[3]
)

Arguments

dat

data as imported by the read_hdx function.

protein

chosen protein.

state

biological state for chosen protein.

sequence

sequence of chosen peptide.

time_t

time point of the measurement.

Value

a data.frame object.

Details

This function shows the measurements of charge from different replicates for specific peptide in specific state in specific time point of measurement.

See also

read_hdx plot_peptide_charge_measurement

Examples

show_peptide_charge_measurement(alpha_dat)
#>      Protein    Sequence Start   End       State Exposure
#>       <char>      <char> <int> <int>      <char>    <num>
#> 1: db_eEF1Ba GFGDLKSPAGL     1    11 ALPHA_Gamma        1
#> 2: db_eEF1Ba GFGDLKSPAGL     1    11 ALPHA_Gamma        1
#> 3: db_eEF1Ba GFGDLKSPAGL     1    11 ALPHA_Gamma        1
#> 4: db_eEF1Ba GFGDLKSPAGL     1    11 ALPHA_Gamma        1
#> 5: db_eEF1Ba GFGDLKSPAGL     1    11 ALPHA_Gamma        1
#> 6: db_eEF1Ba GFGDLKSPAGL     1    11 ALPHA_Gamma        1
#>                                     File     z
#>                                   <char> <int>
#> 1: Tania_161108_1eEF1Bag_compl_KSCN_1min     1
#> 2: Tania_161108_2eEF1Bag_compl_KSCN_1min     1
#> 3: Tania_161108_3eEF1Bag_compl_KSCN_1min     1
#> 4: Tania_161108_1eEF1Bag_compl_KSCN_1min     2
#> 5: Tania_161108_2eEF1Bag_compl_KSCN_1min     2
#> 6: Tania_161108_3eEF1Bag_compl_KSCN_1min     2