Differential deuterium uptake data
show_p_diff_uptake_data.Rd
Present differential deuterium uptake values in selected form
Usage
show_p_diff_uptake_data(
p_diff_uptake_dat,
theoretical = FALSE,
fractional = FALSE,
renamed = TRUE
)
Arguments
- theoretical
logical
, indicator if values are calculated using theoretical controls- fractional
logical
, indicator if values are shown in fractional form- renamed
logical
, indicator if the names of the columns are renamed to user-friendly ones. Currently FALSE not implemented.- diff_uptake_dat
data produced by
create_diff_uptake_dataset
function
Value
a data.frame
object
Details
The function show_uptake_data
generates a subsets
of the diff_uptake_dat based on selected parameters.
The numerical values are rounded to 4 places. The names of columns
are changed to user-friendly ones.
Examples
dat <- read_hdx(system.file(package = "HaDeX", "HaDeX/data/KD_180110_CD160_HVEM.csv"))
#> [1] ""
p_diff_uptake_dat <- create_p_diff_uptake_dataset(dat)
head(show_p_diff_uptake_data(p_diff_uptake_dat))
#> Protein ID Sequence Modification Start End Exposure
#> <char> <int> <char> <lgcl> <int> <int> <num>
#> 1: db_CD160 1 INITSSASQEGTRLN NA 1 15 0.001
#> 2: db_CD160 1 INITSSASQEGTRLN NA 1 15 0.167
#> 3: db_CD160 1 INITSSASQEGTRLN NA 1 15 1.000
#> 4: db_CD160 1 INITSSASQEGTRLN NA 1 15 5.000
#> 5: db_CD160 1 INITSSASQEGTRLN NA 1 15 25.000
#> 6: db_CD160 1 INITSSASQEGTRLN NA 1 15 120.000
#> Diff DU [Da] U(Diff DU) [Da] P value log(P value)
#> <num> <num> <num> <num>
#> 1: 0.0000 0.0000 NA NA
#> 2: 0.3189 0.0460 0.0006 7.4571
#> 3: 0.3413 0.0969 0.0150 4.2002
#> 4: 0.5490 0.0825 0.0006 7.3645
#> 5: 0.6439 0.0549 0.0002 8.4948
#> 6: 0.1082 0.0856 0.2757 1.2885