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Differential deuterium uptake data

show_p_diff_uptake_data.Rd

Present differential deuterium uptake values in selected form

Usage

show_p_diff_uptake_data(
  p_diff_uptake_dat,
  theoretical = FALSE,
  fractional = FALSE,
  renamed = TRUE
)

Arguments

p_diff_uptake_dat

data produced by create_p_diff_uptake_dataset function

theoretical

logical, indicator if values are calculated using theoretical controls

fractional

logical, indicator if values are shown in fractional form

renamed

logical, indicator if the names of the columns are renamed to user-friendly ones. Currently FALSE not implemented.

Value

a data.frame object

Details

The function show_uptake_data generates a subsets of the diff_uptake_dat based on selected parameters. The numerical values are rounded to 4 places. The names of columns are changed to user-friendly ones.

See also

read_hdx create_diff_uptake_dataset

Examples

dat <- read_hdx(system.file(package = "HaDeX", "HaDeX/data/KD_180110_CD160_HVEM.csv"))
#> [1] ""
p_diff_uptake_dat <- create_p_diff_uptake_dataset(dat)
head(show_p_diff_uptake_data(p_diff_uptake_dat))
#>     Protein    ID        Sequence Modification Start   End Exposure
#>      <char> <int>          <char>       <lgcl> <int> <int>    <num>
#> 1: db_CD160     1 INITSSASQEGTRLN           NA     1    15    0.001
#> 2: db_CD160     1 INITSSASQEGTRLN           NA     1    15    0.167
#> 3: db_CD160     1 INITSSASQEGTRLN           NA     1    15    1.000
#> 4: db_CD160     1 INITSSASQEGTRLN           NA     1    15    5.000
#> 5: db_CD160     1 INITSSASQEGTRLN           NA     1    15   25.000
#> 6: db_CD160     1 INITSSASQEGTRLN           NA     1    15  120.000
#>    Diff DU [Da] U(Diff DU) [Da] P value log(P value)
#>           <num>           <num>   <num>        <num>
#> 1:       0.0000          0.0000      NA           NA
#> 2:       0.3189          0.0460  0.0006       7.4571
#> 3:       0.3413          0.0969  0.0150       4.2002
#> 4:       0.5490          0.0825  0.0006       7.3645
#> 5:       0.6439          0.0549  0.0002       8.4948
#> 6:       0.1082          0.0856  0.2757       1.2885