Create differential dataset with statistical validity
create_p_diff_uptake_dataset_with_confidence.RdCreate differential dataset with statistical validity
Usage
create_p_diff_uptake_dataset_with_confidence(
p_diff_uptake_dat,
houde_interval = NULL,
houde_interval_times = NULL,
theoretical = FALSE,
fractional = FALSE
)Value
a data.frame object.
Examples
p_diff_uptake_dat <- create_p_diff_uptake_dataset(alpha_dat)
p_diff_uptake_dat_confidence <- create_p_diff_uptake_dataset_with_confidence(p_diff_uptake_dat)
head(p_diff_uptake_dat_confidence)
#> Protein Sequence Start End Exposure Modification ID MaxUptake
#> 1 db_eEF1Ba GFGDLKSPAGL 1 11 0.167 NA 1 9
#> 2 db_eEF1Ba GFGDLKSPAGL 1 11 1.000 NA 1 9
#> 3 db_eEF1Ba GFGDLKSPAGL 1 11 5.000 NA 1 9
#> 4 db_eEF1Ba GFGDLKSPAGL 1 11 25.000 NA 1 9
#> 5 db_eEF1Ba GFGDLKSPAGL 1 11 150.000 NA 1 9
#> 6 db_eEF1Ba GFGDLKSPAGL 1 11 1440.000 NA 1 9
#> Med_Sequence diff_frac_deut_uptake err_diff_frac_deut_uptake diff_deut_uptake
#> 1 6 1.234906456 0.49049787 0.07447260
#> 2 6 7.739208705 0.87308467 0.43164420
#> 3 6 6.990918595 1.23236102 0.39465576
#> 4 6 9.408523973 2.13823364 0.53044168
#> 5 6 0.780359881 2.00916736 0.06695263
#> 6 6 0.006628648 0.01456231 0.02510190
#> err_diff_deut_uptake diff_theo_frac_deut_uptake
#> 1 0.02076239 0.9127730
#> 2 0.03913032 5.2904450
#> 3 0.05731850 4.8370964
#> 4 0.10681109 6.5013558
#> 5 0.09457525 0.8206046
#> 6 0.05514572 0.3076613
#> err_diff_theo_frac_deut_uptake diff_theo_deut_uptake
#> 1 0.2544742 0.07447260
#> 2 0.4796005 0.43164420
#> 3 0.7025239 0.39465576
#> 4 1.3091295 0.53044168
#> 5 1.1591611 0.06695263
#> 6 0.6758932 0.02510190
#> err_diff_theo_deut_uptake P_value log_p_value valid
#> 1 0.02076239 0.065344248 2.7280859 FALSE
#> 2 0.03913032 0.001789245 6.3259618 TRUE
#> 3 0.05731850 NA NA NA
#> 4 0.10681109 0.023503782 3.7505939 FALSE
#> 5 0.09457525 0.530754368 0.6334559 FALSE
#> 6 0.05514572 0.672642212 0.3965417 FALSE