Aggregate test result
calculate_aggregated_test_results.Rd...
Usage
calculate_aggregated_test_results(
p_diff_uptake_conf_dat,
method = c("significance", "weiss"),
time_t = 1,
skip_amino = 1
)Value
a data.frame object
Examples
p_diff_uptake_dat <- create_p_diff_uptake_dataset(alpha_dat)
p_diff_uptake_conf_dat <- create_p_diff_uptake_dataset_with_confidence(p_diff_uptake_dat)
calculate_aggregated_test_results(p_diff_uptake_conf_dat, method = "significance")
#> Residues 60s
#> 1 1 0
#> 2 2 1
#> 3 3 1
#> 4 4 1
#> 5 5 1
#> 6 6 1
#> 7 7 1
#> 8 8 1
#> 9 9 1
#> 10 10 1
#> 11 11 1
#> 12 12 1
#> 13 13 1
#> 14 14 1
#> 15 15 0
#> 16 16 0
#> 17 17 0
#> 18 18 1
#> 19 19 1
#> 20 20 1
#> 21 21 1
#> 22 22 1
#> 23 23 0
#> 24 24 0
#> 25 25 0
#> 26 26 0
#> 27 27 0
#> 28 28 0
#> 29 29 0
#> 30 30 0
#> 31 31 0
#> 32 32 0
#> 33 33 0
#> 34 34 0
#> 35 35 1
#> 36 36 1
#> 37 37 1
#> 38 38 0
#> 39 39 0
#> 40 40 0
#> 41 41 0
#> 42 42 0
#> 43 43 0
#> 44 44 0
#> 45 45 0
#> 46 46 0
#> 47 47 0
#> 48 48 0
#> 49 49 0
#> 50 50 0
#> 51 51 0
#> 52 52 1
#> 53 53 1
#> 54 54 1
#> 55 55 1
#> 56 56 1
#> 57 57 1
#> 58 58 0
#> 59 59 0
#> 60 60 0
#> 61 61 0
#> 62 62 0
#> 63 63 0
#> 64 64 0
#> 65 65 0
#> 66 66 0
#> 67 67 0
#> 68 68 0
#> 69 69 0
#> 70 70 0
#> 71 71 0
#> 72 72 0
#> 73 73 0
#> 74 74 0
#> 75 75 0
#> 76 76 0
#> 77 77 0
#> 78 78 0
#> 79 79 0
#> 80 80 0
#> 81 81 0
#> 82 82 0
#> 83 83 0
#> 84 84 0
#> 85 85 1
#> 86 86 1
#> 87 87 1
#> 88 88 1
#> 89 89 1
#> 90 90 1
#> 91 91 1
#> 92 92 1
#> 93 93 1
#> 94 94 1
#> 95 95 1
#> 96 96 1
#> 97 97 1
#> 98 98 1
#> 99 99 1
#> 100 100 1
#> 101 101 1
#> 102 102 1
#> 103 103 0
#> 104 104 0
#> 105 105 0
#> 106 106 0
#> 107 107 0
#> 108 108 0
#> 109 109 0
#> 110 110 0
#> 111 111 0
#> 112 112 0
#> 113 113 0
#> 114 114 0
#> 115 115 0
#> 116 116 0
#> 117 117 0
#> 118 118 0
#> 119 119 0
#> 120 120 0
#> 121 121 0
#> 122 122 0
#> 123 123 0
#> 124 124 0
#> 125 125 0
#> 126 126 0
#> 127 127 0
#> 128 128 0
#> 129 129 0
#> 130 130 0
#> 131 131 0
#> 132 132 0
#> 133 133 0
#> 134 134 0
#> 135 135 0
#> 136 136 0
#> 137 137 1
#> 138 138 1
#> 139 139 1
#> 140 140 1
#> 141 141 1
#> 142 142 1
#> 143 143 1
#> 144 144 1
#> 145 145 1
#> 146 146 1
#> 147 147 1
#> 148 148 1
#> 149 149 1
#> 150 150 1
#> 151 151 1
#> 152 152 1
#> 153 153 1
#> 154 154 1
#> 155 155 1
#> 156 156 1
#> 157 157 1
#> 158 158 1
#> 159 159 1
#> 160 160 0
#> 161 161 1
#> 162 162 1
#> 163 163 1
#> 164 164 1
#> 165 165 1
#> 166 166 1
#> 167 167 0
#> 168 168 0
#> 169 169 0
#> 170 170 0
#> 171 171 0
#> 172 172 0
#> 173 173 0
#> 174 174 0
#> 175 175 0
#> 176 176 0
#> 177 177 1
#> 178 178 1
#> 179 179 1
#> 180 180 1
#> 181 181 1
#> 182 182 1
#> 183 183 1
#> 184 184 1
#> 185 185 1
#> 186 186 1
#> 187 187 1
#> 188 188 1
#> 189 189 1
#> 190 190 1
#> 191 191 0
#> 192 192 1
#> 193 193 1
#> 194 194 1
#> 195 195 1
#> 196 196 1
#> 197 197 1
#> 198 198 1
#> 199 199 1
#> 200 200 1
#> 201 201 1
#> 202 202 1
#> 203 203 0
#> 204 204 0
#> 205 205 0
#> 206 206 0
#> 207 207 0
#> 208 208 0
#> 209 209 0
#> 210 210 0
#> 211 211 0
#> 212 212 1
#> 213 213 1
#> 214 214 1
#> 215 215 1
#> 216 216 1
#> 217 217 0
#> 218 218 0
#> 219 219 1
#> 220 220 1
#> 221 221 1
calculate_aggregated_test_results(p_diff_uptake_conf_dat, method = "weiss")
#> Warning: Item 1 has 10 rows but longest item has 11; recycled with remainder.
#> Warning: Item 1 has 9 rows but longest item has 10; recycled with remainder.
#> Warning: Item 1 has 8 rows but longest item has 9; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 6 rows but longest item has 7; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 4 rows but longest item has 5; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 6 rows but longest item has 7; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 6 rows but longest item has 7; recycled with remainder.
#> Warning: Item 1 has 16 rows but longest item has 17; recycled with remainder.
#> Warning: Item 1 has 14 rows but longest item has 15; recycled with remainder.
#> Warning: Item 1 has 12 rows but longest item has 13; recycled with remainder.
#> Warning: Item 1 has 4 rows but longest item has 5; recycled with remainder.
#> Warning: Item 1 has 11 rows but longest item has 12; recycled with remainder.
#> Warning: Item 1 has 10 rows but longest item has 11; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 8 rows but longest item has 9; recycled with remainder.
#> Warning: Item 1 has 9 rows but longest item has 10; recycled with remainder.
#> Warning: Item 1 has 6 rows but longest item has 7; recycled with remainder.
#> Warning: Item 1 has 4 rows but longest item has 5; recycled with remainder.
#> Warning: Item 1 has 10 rows but longest item has 11; recycled with remainder.
#> Warning: Item 1 has 11 rows but longest item has 12; recycled with remainder.
#> Warning: Item 1 has 13 rows but longest item has 14; recycled with remainder.
#> Warning: Item 1 has 14 rows but longest item has 15; recycled with remainder.
#> Warning: Item 1 has 10 rows but longest item has 11; recycled with remainder.
#> Warning: Item 1 has 12 rows but longest item has 13; recycled with remainder.
#> Warning: Item 1 has 13 rows but longest item has 14; recycled with remainder.
#> Warning: Item 1 has 9 rows but longest item has 10; recycled with remainder.
#> Warning: Item 1 has 8 rows but longest item has 9; recycled with remainder.
#> Warning: Item 1 has 10 rows but longest item has 11; recycled with remainder.
#> Warning: Item 1 has 6 rows but longest item has 7; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 15 rows but longest item has 16; recycled with remainder.
#> Warning: Item 1 has 20 rows but longest item has 21; recycled with remainder.
#> Warning: Item 1 has 14 rows but longest item has 15; recycled with remainder.
#> Warning: Item 1 has 18 rows but longest item has 19; recycled with remainder.
#> Warning: Item 1 has 20 rows but longest item has 21; recycled with remainder.
#> Warning: Item 1 has 16 rows but longest item has 17; recycled with remainder.
#> Warning: Item 1 has 10 rows but longest item has 11; recycled with remainder.
#> Warning: Item 1 has 19 rows but longest item has 20; recycled with remainder.
#> Warning: Item 1 has 17 rows but longest item has 18; recycled with remainder.
#> Warning: Item 1 has 16 rows but longest item has 17; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 4 rows but longest item has 5; recycled with remainder.
#> Warning: Item 1 has 16 rows but longest item has 17; recycled with remainder.
#> Warning: Item 1 has 17 rows but longest item has 18; recycled with remainder.
#> Warning: Item 1 has 19 rows but longest item has 20; recycled with remainder.
#> Warning: Item 1 has 17 rows but longest item has 18; recycled with remainder.
#> Warning: Item 1 has 16 rows but longest item has 17; recycled with remainder.
#> Warning: Item 1 has 12 rows but longest item has 13; recycled with remainder.
#> Warning: Item 1 has 10 rows but longest item has 11; recycled with remainder.
#> Warning: Item 1 has 6 rows but longest item has 7; recycled with remainder.
#> Warning: Item 1 has 7 rows but longest item has 8; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 7 rows but longest item has 8; recycled with remainder.
#> Warning: Item 1 has 10 rows but longest item has 11; recycled with remainder.
#> Warning: Item 1 has 10 rows but longest item has 11; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 4 rows but longest item has 5; recycled with remainder.
#> Warning: Item 1 has 6 rows but longest item has 7; recycled with remainder.
#> Warning: Item 1 has 8 rows but longest item has 9; recycled with remainder.
#> Warning: Item 1 has 9 rows but longest item has 10; recycled with remainder.
#> Warning: Item 1 has 16 rows but longest item has 17; recycled with remainder.
#> Warning: Item 1 has 8 rows but longest item has 9; recycled with remainder.
#> Warning: Item 1 has 15 rows but longest item has 16; recycled with remainder.
#> Warning: Item 1 has 6 rows but longest item has 7; recycled with remainder.
#> Warning: Item 1 has 13 rows but longest item has 14; recycled with remainder.
#> Warning: Item 1 has 27 rows but longest item has 28; recycled with remainder.
#> Warning: Item 1 has 19 rows but longest item has 20; recycled with remainder.
#> Warning: Item 1 has 7 rows but longest item has 8; recycled with remainder.
#> Warning: Item 1 has 9 rows but longest item has 10; recycled with remainder.
#> Warning: Item 1 has 14 rows but longest item has 15; recycled with remainder.
#> Warning: Item 1 has 15 rows but longest item has 16; recycled with remainder.
#> Warning: Item 1 has 12 rows but longest item has 13; recycled with remainder.
#> Warning: Item 1 has 15 rows but longest item has 16; recycled with remainder.
#> Warning: Item 1 has 13 rows but longest item has 14; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 11 rows but longest item has 12; recycled with remainder.
#> Warning: Item 1 has 12 rows but longest item has 13; recycled with remainder.
#> Warning: Item 1 has 10 rows but longest item has 11; recycled with remainder.
#> Warning: Item 1 has 11 rows but longest item has 12; recycled with remainder.
#> Warning: Item 1 has 12 rows but longest item has 13; recycled with remainder.
#> Warning: Item 1 has 7 rows but longest item has 8; recycled with remainder.
#> Warning: Item 1 has 8 rows but longest item has 9; recycled with remainder.
#> Warning: Item 1 has 6 rows but longest item has 7; recycled with remainder.
#> Warning: Item 1 has 7 rows but longest item has 8; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 6 rows but longest item has 7; recycled with remainder.
#> Warning: Item 1 has 7 rows but longest item has 8; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 6 rows but longest item has 7; recycled with remainder.
#> Warning: Item 1 has 7 rows but longest item has 8; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 4 rows but longest item has 5; recycled with remainder.
#> Warning: Item 1 has 7 rows but longest item has 8; recycled with remainder.
#> Warning: Item 1 has 6 rows but longest item has 7; recycled with remainder.
#> Warning: Item 1 has 7 rows but longest item has 8; recycled with remainder.
#> Warning: Item 1 has 8 rows but longest item has 9; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 5 rows but longest item has 6; recycled with remainder.
#> Warning: Item 1 has 4 rows but longest item has 5; recycled with remainder.
#> pos aa value
#> 1 1 x 0.0000000000
#> 2 2 L 0.4316442009
#> 3 3 L 0.4199013993
#> 4 4 L 0.4310889351
#> 5 5 D 0.4310889351
#> 6 6 G 0.3291762528
#> 7 7 K 0.3291762528
#> 8 8 S 0.3291762528
#> 9 9 P 0.0000000000
#> 10 10 L 0.3347822690
#> 11 11 G 0.3455539050
#> 12 12 L 0.3559280000
#> 13 13 Y 0.1879596608
#> 14 14 V 0.1879596608
#> 15 15 L 0.1224110407
#> 16 16 K 0.1642385870
#> 17 17 D 0.1503144429
#> 18 18 D 0.2153659671
#> 19 19 L 0.2153659671
#> 20 20 D 0.2158720512
#> 21 21 D 0.2036101606
#> 22 22 D 0.2044567921
#> 23 23 D 0.1136382355
#> 24 24 D 0.0779845594
#> 25 25 D 0.1565441248
#> 26 26 E 0.1565441248
#> 27 27 G 0.2177590216
#> 28 28 D 0.2096322196
#> 29 29 V 0.2096322196
#> 30 30 P 0.0000000000
#> 31 31 S 0.1829384783
#> 32 32 Q 0.1829384783
#> 33 33 A 0.1831194033
#> 34 34 x 0.0000000000
#> 35 35 E 0.1005256667
#> 36 36 A 0.1005256667
#> 37 37 V 0.1005256667
#> 38 38 A 0.1264453776
#> 39 39 A 0.1796679791
#> 40 40 L 0.1433885064
#> 41 41 H 0.1148066372
#> 42 42 S 0.1148066372
#> 43 43 S 0.1148066372
#> 44 44 P 0.0000000000
#> 45 45 P 0.0000000000
#> 46 46 P 0.0000000000
#> 47 47 A 0.1148066372
#> 48 48 D 0.1191522761
#> 49 49 L 0.2566086031
#> 50 50 C 0.2566086031
#> 51 51 H 0.2345691032
#> 52 52 H 0.3437770475
#> 53 53 H 0.2927548466
#> 54 54 R 0.2927548466
#> 55 55 W 0.2927548466
#> 56 56 Y 0.2927548466
#> 57 57 N 0.2927548466
#> 58 58 x 0.0000000000
#> 59 59 Y 0.0366650683
#> 60 60 K 0.0366650683
#> 61 61 S 0.0366650683
#> 62 62 Y 0.0366650683
#> 63 63 E 0.0366650683
#> 64 64 K 0.0366650683
#> 65 65 D 0.0547479767
#> 66 66 K 0.0547479767
#> 67 67 D -0.0010409829
#> 68 68 S -0.0010409829
#> 69 69 L -0.0010409829
#> 70 70 P 0.0000000000
#> 71 71 G -0.0010409829
#> 72 72 V -0.0010409829
#> 73 73 K -0.0010409829
#> 74 74 K 0.0059218492
#> 75 75 E 0.0276484936
#> 76 76 L 0.0276484936
#> 77 77 G 0.0276484936
#> 78 78 K 0.0276484936
#> 79 79 Y -0.0461468827
#> 80 80 G -0.0461468827
#> 81 81 P 0.0000000000
#> 82 82 A -0.0461468827
#> 83 83 D 0.0442749793
#> 84 84 L 0.1149040510
#> 85 85 E 0.5083777374
#> 86 86 L 0.4987988542
#> 87 87 L 0.5000781879
#> 88 88 T 0.5000781879
#> 89 89 G 0.5000781879
#> 90 90 S 0.5000781879
#> 91 91 G 0.5000781879
#> 92 92 A 0.5000781879
#> 93 93 T 0.5000781879
#> 94 94 D 0.5000781879
#> 95 95 S 0.5000781879
#> 96 96 K 0.5000781879
#> 97 97 D 0.5000781879
#> 98 98 L 0.3314122330
#> 99 99 D 0.3314122330
#> 100 100 D 0.3314122330
#> 101 101 I 0.3314122330
#> 102 102 D 0.3314122330
#> 103 103 D 0.0604610000
#> 104 104 L 0.0679578654
#> 105 105 G 0.0679578654
#> 106 106 S 0.0679578654
#> 107 107 D 0.0679578654
#> 108 108 Q 0.0504065869
#> 109 109 Q 0.0292293552
#> 110 110 E 0.0292293552
#> 111 111 E 0.0292293552
#> 112 112 S 0.0292293552
#> 113 113 E 0.0292293552
#> 114 114 E 0.0292293552
#> 115 115 A 0.0292293552
#> 116 116 K 0.0292293552
#> 117 117 R 0.0292293552
#> 118 118 L 0.0292293552
#> 119 119 R 0.0292293552
#> 120 120 E -0.0174883187
#> 121 121 E -0.0508827181
#> 122 122 R -0.0508827181
#> 123 123 L -0.0903104838
#> 124 124 L 0.0007091861
#> 125 125 Q 0.0818387834
#> 126 126 L 0.2155169795
#> 127 127 E 0.2155169795
#> 128 128 S 0.2155169795
#> 129 129 K 0.2155169795
#> 130 130 K 0.2155169795
#> 131 131 A 0.2155169795
#> 132 132 K 0.2155169795
#> 133 133 K 0.2155169795
#> 134 134 P 0.0000000000
#> 135 135 A 0.2155169795
#> 136 136 x 0.0000000000
#> 137 137 L 0.4735283250
#> 138 138 L 0.4670917775
#> 139 139 K 0.4670917775
#> 140 140 S 0.4670917775
#> 141 141 S 0.4670917775
#> 142 142 I 0.4670917775
#> 143 143 L 0.3833820892
#> 144 144 D 0.4092657922
#> 145 145 M 0.4129133651
#> 146 146 V 0.4129133651
#> 147 147 K 0.4129133651
#> 148 148 P 0.0000000000
#> 149 149 W 0.4129133651
#> 150 150 D 0.4129133651
#> 151 151 D 0.5018173249
#> 152 152 E 0.5018173249
#> 153 153 T 0.5018173249
#> 154 154 D 0.4247679772
#> 155 155 E 0.1792668001
#> 156 156 E 0.1631846049
#> 157 157 K 0.1631846049
#> 158 158 L 0.1631846049
#> 159 159 E 0.1631846049
#> 160 160 x 0.0000000000
#> 161 161 L 0.1813836001
#> 162 162 L 0.1933751101
#> 163 163 R 0.1933751101
#> 164 164 C 0.1719705839
#> 165 165 I 0.1719705839
#> 166 166 Q 0.1719705839
#> 167 167 K 0.2159688536
#> 168 168 G 0.2270474048
#> 169 169 G 0.2183010315
#> 170 170 Y 0.3012723921
#> 171 171 V 0.3012723921
#> 172 172 W 0.3012723921
#> 173 173 G 0.3012723921
#> 174 174 S 0.3012723921
#> 175 175 S 0.3737867830
#> 176 176 C 0.3799416305
#> 177 177 L 0.4290563690
#> 178 178 C 0.4398801331
#> 179 179 P 0.0000000000
#> 180 180 V 0.4398801331
#> 181 181 G 0.4398801331
#> 182 182 Y 0.4678445289
#> 183 183 G 0.5090831445
#> 184 184 I 0.5090831445
#> 185 185 K 0.5090831445
#> 186 186 C 0.1900291606
#> 187 187 L 0.1900291606
#> 188 188 Q 0.1900291606
#> 189 189 I 0.1900291606
#> 190 190 Q 0.1900291606
#> 191 191 L 0.4486248171
#> 192 192 E 0.4087878736
#> 193 193 V 0.4087878736
#> 194 194 E 0.4087878736
#> 195 195 L 0.3795342325
#> 196 196 L 0.3227256852
#> 197 197 K 0.3227256852
#> 198 198 L 0.2779365367
#> 199 199 G 0.2779365367
#> 200 200 T 0.2779365367
#> 201 201 D 0.2779365367
#> 202 202 M 0.2711696088
#> 203 203 F 0.1800200963
#> 204 204 F 0.1552000741
#> 205 205 F 0.1172879255
#> 206 206 F 0.1241242654
#> 207 207 I 0.1241242654
#> 208 208 T 0.1136813339
#> 209 209 A 0.1147571683
#> 210 210 M 0.2514835693
#> 211 211 V 0.2596182404
#> 212 212 M 0.2234148214
#> 213 213 D 0.2459592984
#> 214 214 V 0.2459592984
#> 215 215 Q 0.2459592984
#> 216 216 S 0.2459592984
#> 217 217 M 0.3185355258
#> 218 218 F 0.2202156667
#> 219 219 V 0.1729096667
#> 220 220 A 0.1729096667
#> 221 221 A 0.1729096667