Summary data

Show summary table

Usage

show_summary_data(
  dat,
  confidence_level = "",
  protein_length = max(dat[["End"]])
)

Arguments

dat

data imported by the read_hdx function

confidence_level

confidence level for the test, from range [0, 1].

protein_length

the length of the protein sequence

Value

a data.table object

Details

The format in the table is suggested by the community and should be provided for experimetal data.

References

Masson, G.R., Burke, J.E., Ahn, N.G., Anand, G.S., Borchers, C., Brier, S., Bou-Assaf, G.M., Engen, J.R., Englander, S.W., Faber, J., et al. (2019). Recommendations for performing, interpreting and reporting hydrogen deuterium exchange mass spectrometry (HDX-MS) experiments. Nat Methods 16, 595–602

See also

read_hdx

Examples

dat <- read_hdx(system.file(package = "HaDeX", "HaDeX/data/KD_180110_CD160_HVEM.csv"))
#> [1] ""
show_summary_data(dat)
#>                             Name  Value
#> 1                HDX time course      7
#> 2             Number of peptides     41
#> 3             Sequence coverage  86.36%
#> 4         Average peptide length  14.68
#> 5                     Redundancy   4.56
#> 6                     Replicates      4
#> 7 Significant differences in HDX