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Show peptide mass measurement

show_peptide_mass_measurement.Rd

Show the mass measurements from replicates for peptide in specific time point.

Usage

show_peptide_mass_measurement(
  rep_mass_dat,
  protein = rep_mass_dat[["Protein"]][1],
  state = rep_mass_dat[["State"]][1],
  sequence = rep_mass_dat[["Sequence"]][1],
  time_t = unique(rep_mass_dat[["Exposure"]])[3]
)

Arguments

rep_mass_dat

data produced by calculate_exp_masses_per_replicate function.

protein

chosen protein.

state

biological state for chosen protein.

sequence

sequence of chosen peptide.

time_t

time point of the measurement.

Value

a data.frame object.

Details

This function shows the measurements of mass from different replicates for specific peptide in specific state in specific time point of measurement.

See also

read_hdx calculate_exp_masses_per_replicate calculate_exp_masses calculate_state_uptake calculate_diff_uptake

Examples

rep_mass_dat <- calculate_exp_masses_per_replicate(alpha_dat)
show_peptide_mass_measurement(rep_mass_dat)
#>     Protein    Sequence Start End Exposure       State
#> 1 db_eEF1Ba GFGDLKSPAGL     1  11        1 ALPHA_Gamma
#> 2 db_eEF1Ba GFGDLKSPAGL     1  11        1 ALPHA_Gamma
#> 3 db_eEF1Ba GFGDLKSPAGL     1  11        1 ALPHA_Gamma
#>                                    File     Mass
#> 1 Tania_161108_1eEF1Bag_compl_KSCN_1min 1064.191
#> 2 Tania_161108_2eEF1Bag_compl_KSCN_1min 1064.085
#> 3 Tania_161108_3eEF1Bag_compl_KSCN_1min 1064.188