State deuterium uptake comparison
plot_state_comparison.Rd
Comparison plot of deuterium uptake values in time point for biological states.
Usage
plot_state_comparison(
uptake_dat,
skip_amino = 0,
theoretical = FALSE,
fractional = FALSE,
line_size = 1.5,
all_times = FALSE,
time_t = NULL,
interactive = getOption("hadex_use_interactive_plots")
)
Arguments
- uptake_dat
data produced by
calculate_state_uptake
function- skip_amino
integer
, indicator how many aminos from the N-terminus should be omitted- theoretical
logical
, indicator if values are calculated using theoretical controls- fractional
logical
, indicator if values are shown in fractional form- line_size
...
- all_times
...
- time_t
...
- interactive
...
Details
The function plot_state_comparison
generates
a comparison plot, presenting deuterium uptake values of peptides
from selected protein in selected biological states at one time point
of measurement at once.
On X-axis there is a position in a sequence, with length of a segment
of each peptide representing its length. On Y-axis there
is deuterium uptake in selected form. Error bars represents the combined
and propagated uncertainty.
Examples
uptake_dat <- calculate_state_uptake(alpha_dat)
plot_state_comparison(uptake_dat)
plot_state_comparison(uptake_dat, all_times = TRUE)
plot_state_comparison(uptake_dat, fractional = TRUE, all_times = TRUE)