Replicate mass uptake curve

Plot the mass uptake curve for selected peptide to see the difference between replicates.

Usage

plot_replicate_mass_uptake(
  dat,
  protein = dat[["Protein"]][1],
  state = dat[["State"]][1],
  sequence = dat[["Sequence"]][1],
  aggregated = FALSE,
  log_x = TRUE,
  interactive = getOption("hadex_use_interactive_plots")
)

Arguments

dat

data imported by the read_hdx function

protein

selected protein

state

selected biological state for given protein

sequence

selected peptide sequence for given protein in given biological state

aggregated

logical, indicator if presented data is aggregated on replicate level

log_x

logical, indicator if the X axis values are transformed to log10

interactive

...

Value

a ggplot object

Details

The function plot_replicate_mass_uptake generates a plot showing the mass uptake for selected protein in replicates of the experiments. The values can be presented in two ways: as aggregated values for each replicate, or before aggregation - measured values for charge values within a replicate. The mass uptake is generated by subtracting the MHP mass of a peptide from measured mass and the mass uptake is presented in Daltons.

See also

read_hdx calculate_exp_masses_per_replicate

Examples

plot_replicate_mass_uptake(alpha_dat)

plot_replicate_mass_uptake(alpha_dat, aggregated = TRUE)