Plot peptide mass measurement

Plot the mass measurements from replicates for peptide in specific time point.

Usage

plot_peptide_mass_measurement(
  dat,
  protein = dat[["Protein"]][1],
  state = dat[["State"]][1],
  sequence = dat[["Sequence"]][1],
  show_charge_values = TRUE,
  time_t = unique(dat[["Exposure"]])[3],
  interactive = getOption("hadex_use_interactive_plots")
)

Arguments

dat

data produced by read_hdx function.

protein

chosen protein.

state

biological state for chosen protein.

sequence

sequence of chosen peptide.

show_charge_values

...

time_t

time point of the measurement.

Value

a ggplot object.

Details

This function shows the measurements of mass from different replicates for specific peptide in specific state in specific time point of measurement on the plot. Moreover, on the plot is shown the average mass from the replicates, used later in calculations. The ribbon next to the dotted average mass indicates the uncertainty.

See also

read_hdx calculate_exp_masses_per_replicate calculate_exp_masses calculate_state_uptake calculate_diff_uptake

Examples

plot_peptide_mass_measurement(alpha_dat, sequence = "FGSDDEEESEEAKRLRE")

plot_peptide_mass_measurement(alpha_dat, sequence = "FGSDDEEESEEAKRLRE", show_charge_values = FALSE)