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Butterfly deuterium uptake plot

plot_butterfly.Rd

Butterfly plot of deuterium uptake values in time for one biological state.

Usage

plot_butterfly(
  uptake_dat,
  theoretical = FALSE,
  fractional = FALSE,
  uncertainty_type = "ribbon",
  interactive = getOption("hadex_use_interactive_plots")
)

Arguments

uptake_dat

data produced by create_state_uptake_dataset function.

theoretical

logical, determines if values are theoretical.

fractional

logical, determines if values are fractional.

uncertainty_type

type of presenting uncertainty, possible values: "ribbon", "bars" or "bars + line".

interactive

logical, whether plot should have an interactive layer created with with ggiraph, which would add tooltips to the plot in an interactive display (HTML/Markdown documents or shiny app).

Value

a ggplot object.

Details

Function plot_butterfly generates butterfly plot based on provided data and parameters. On X-axis there is peptide ID. On the Y-axis there is deuterium uptake in chosen form. Data from multiple time points of measurement is presented.

See also

create_state_uptake_dataset

Examples

state_uptake_dat <- create_state_uptake_dataset(alpha_dat)
plot_butterfly(state_uptake_dat)