Calculates aggregated uptake difference for peptide pool
create_aggregated_diff_uptake_dataset.RdThis is a wrapper function for calculate_aggregated_diff_uptake,
which calculates aggregated differential uptake for only
one time point. This function returns values for all
time points from `diff_uptake_dat`.
Arguments
- diff_uptake_dat
differential uptake data, product of e.q.
create_diff_uptake_dataset
Value
a data.frame object
Examples
diff_uptake_dat <- create_diff_uptake_dataset(alpha_dat)
head(create_aggregated_diff_uptake_dataset(diff_uptake_dat))
#> position aa diff_frac_deut_uptake err_diff_frac_deut_uptake diff_deut_uptake
#> 1 1 G 1.2349065 0.4904979 0.07447260
#> 2 2 F 0.2299220 0.5307790 0.01984222
#> 3 3 G 0.3830136 0.4202586 0.02311448
#> 4 4 D 0.3830136 0.4202586 0.02311448
#> 5 5 L 1.3962052 0.5529766 0.04873693
#> 6 6 K 1.3962052 0.5529766 0.04873693
#> err_diff_deut_uptake diff_theo_frac_deut_uptake
#> 1 0.02076239 0.9127730
#> 2 0.02092370 0.2199031
#> 3 0.01620374 0.3064422
#> 4 0.01620374 0.3064422
#> 5 0.01766158 0.9800815
#> 6 0.01766158 0.9800815
#> err_diff_theo_frac_deut_uptake diff_theo_deut_uptake
#> 1 0.2544742 0.07447260
#> 2 0.2818287 0.01984222
#> 3 0.2320153 0.02311448
#> 4 0.2320153 0.02311448
#> 5 0.3748293 0.04873693
#> 6 0.3748293 0.04873693
#> err_diff_theo_deut_uptake Exposure
#> 1 0.02076239 0.167
#> 2 0.02092370 0.167
#> 3 0.01620374 0.167
#> 4 0.01620374 0.167
#> 5 0.01766158 0.167
#> 6 0.01766158 0.167