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Plots uc with linear fit

plot_lm.Rd

Plots uptake curve for a peptide with linear fit. Used in GUI to present uptake curves for edge cases, where the three-exponential model cannot be fitted.

Usage

plot_lm(fit_dat, class_name = NA, interactive = T)

Arguments

fit_dat

deuterium uptake data for selected peptide.

class_name

class name assigned to selected peptide.

interactive

...

Value

a ggplot2 object. For interactive mode, conversion to girafe is needed.

See also

Examples

kin_dat <- prepare_kin_dat(alpha_dat)
fit_dat <- kin_dat[kin_dat[["ID"]]==1, ]
plot_lm(fit_dat, class_name = unique(fit_dat[["class_name"]]))
#> Warning: Ignoring unknown aesthetics: tooltip
#> Error in geom_point(aes(x = Exposure, y = deut_uptake, tooltip = glue("Sequence: {sequence}\n                                                Exposure: {Exposure}\n                                                DU = {formatC(deut_uptake, 2) Da}\n                                                Err DU = {formatC(err_deut_uptake, 2) Da}")),     shape = 1, size = 3): Problem while computing aesthetics.
#> ℹ Error occurred in the 1st layer.
#> Caused by error:
#> ! Failed to parse glue component
#> Caused by error in `parse()`:
#> ! <text>:1:25: unexpected symbol
#> 1: formatC(deut_uptake, 2) Da
#>                             ^