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Calculates the uc distance for uptake curve

get_uc_distance.Rd

Calculates the uc distance between uptake curves for one peptide in two biological states. The possible methods of caluclation is described in the vignette TODO. This function supports comparison of two different peptides provided that the values Start, End, MaxUptake and Exposure are the same.

Usage

get_uc_distance(fit_dat_1, fit_dat_2)

Arguments

fit_dat_1

data.frame with uc data for peptide in first state

fit_dat_2

data.frame with uc data for peptide in second state

Value

a one-row data.frame

See also

create_uc_distance_dataset

Examples

kin_dat_1 <- prepare_kin_dat(alpha_dat, state = unique(alpha_dat[["State"]])[1])
kin_dat_2 <- prepare_kin_dat(alpha_dat, state = unique(alpha_dat[["State"]])[2])
fit_dat_1 <- kin_dat_1[kin_dat_1[["ID"]] == 1, ]
fit_dat_2 <- kin_dat_2[kin_dat_2[["ID"]] == 1, ]
get_uc_distance(fit_dat_1, fit_dat_2)
#> # A tibble: 1 × 8
#> # Groups:   MaxUptake, Start [1]
#>   MaxUptake Start   End frac_uptake_diff uptake_diff frac_uptake_dist
#>       <dbl> <dbl> <dbl>            <dbl>       <dbl>            <dbl>
#> 1         9     1    11             74.1        138.           0.0423
#> # ℹ 2 more variables: uptake_dist <dbl>, Sequence <chr>