Creates dataset with uc distances

This function iterates through common list of peptides in two states, based on their position in the sequence. For each pair of peptide data, the uc distance is calculated. The method of uc distance calucation is described in the vigniette TODO.

Usage

create_uc_distance_dataset(kin_dat_1, kin_dat_2)

Arguments

kin_dat_1

kinetic data for the first state

kin_dat_2

kinetic data for the second state

Value

data.frame for plotting functions

See also

get_uc_distance plot_uc_distance

Examples

kin_dat_1 <- prepare_kin_dat(alpha_dat, state = unique(alpha_dat[["State"]])[1])
kin_dat_2 <- prepare_kin_dat(alpha_dat, state = unique(alpha_dat[["State"]])[2])
uc_dist_dataset <- create_uc_distance_dataset(kin_dat_1, kin_dat_2)
head(uc_dist_dataset)
#> # A tibble: 6 × 8
#> # Groups:   MaxUptake, Start [6]
#>   MaxUptake Start   End frac_uptake_diff uptake_diff frac_uptake_dist
#>       <dbl> <dbl> <dbl>            <dbl>       <dbl>            <dbl>
#> 1         9     1    11             74.1       138.              4.23
#> 2         8     2    11             43.4        86.8             3.22
#> 3         7     3    11             34.8        59.6             2.76
#> 4         4     5    10            726.       4834.              3.45
#> 5         5     5    11             24.3        26.2             3.16
#> 6         5     9    14             44.4        58.4             3.67
#> # ℹ 2 more variables: uptake_dist <dbl>, Sequence <chr>